IL_9YPS_256

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|9|G|1604
9YPS|1|9|G|1605
9YPS|1|9|G|1606
9YPS|1|9|A|1607
9YPS|1|9|U|1608
9YPS|1|9|C|1609
9YPS|1|9|G|1610
*
9YPS|1|9|C|1629
9YPS|1|9|A|1630
9YPS|1|9|U|1631
9YPS|1|9|G|1632
9YPS|1|9|A|1633
9YPS|1|9|A|1634
9YPS|1|9|C|1635

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain SS

uS13

Chain TT

eS19