IL_9YPT_028

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9YPT|1|5|G|666, 9YPT|1|5|A|667, 9YPT|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPT_028 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1629

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_09092.2

Basepair signature

cWW-cWW

Number of instances in this motif group

15

Unit IDs

9YPT|1|5|G|487
9YPT|1|5|G|488
*
9YPT|1|5|C|665
9YPT|1|5|G|666
9YPT|1|5|A|667
9YPT|1|5|C|668
9YPT|1|5|C|669

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

Ribosomal protein L18

Chain r

eL28