IL_9YPT_035

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

9YPT|1|5|G|729, 9YPT|1|5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPT_035 not in the Motif Atlas

Geometric match to IL_8GLP_036

Geometric discrepancy: 0.0695

The information below is about IL_8GLP_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75501.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

9YPT|1|5|C|727
9YPT|1|5|U|728
9YPT|1|5|G|729
9YPT|1|5|G|730
9YPT|1|5|G|731
*
9YPT|1|5|C|938
9YPT|1|5|G|939

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L7

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a