IL_9YPT_054
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9YPT|1|5|A|1650, 9YPT|1|5|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPT_054 not in the Motif Atlas
- Homologous match to IL_9PN5_027
- Geometric discrepancy: 0.0523
- The information below is about IL_9PN5_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.4
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YPT|1|5|G|1522
9YPT|1|5|A|1523
9YPT|1|5|A|1524
9YPT|1|5|A|1525
9YPT|1|5|G|1526
*
9YPT|1|5|C|1648
9YPT|1|5|U|1649
9YPT|1|5|A|1650
9YPT|1|5|G|1651
9YPT|1|5|U|1652
9YPT|1|5|A|1653
9YPT|1|5|G|1654
9YPT|1|5|C|1655
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- Ribosomal protein L37
Coloring options: