IL_9YPT_059

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

9YPT|1|5|G|1625, 9YPT|1|5|A|1637, 9YPT|1|5|A|1638, 9YPT|1|5|U|1639

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPT_059 not in the Motif Atlas

Homologous match to IL_8GLP_062

Geometric discrepancy: 0.0594

The information below is about IL_8GLP_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89509.4

Basepair signature

cWW-cWW

Number of instances in this motif group

11

Unit IDs

9YPT|1|5|G|1624
9YPT|1|5|G|1625
9YPT|1|5|G|1626
*
9YPT|1|5|U|1636
9YPT|1|5|A|1637
9YPT|1|5|A|1638
9YPT|1|5|U|1639
9YPT|1|5|C|1640

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain P

Large ribosomal subunit protein uL22

Chain j

Ribosomal protein L37