IL_9YPT_074
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 9YPT|1|5|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPT_074 not in the Motif Atlas
- Homologous match to IL_8GLP_075
- Geometric discrepancy: 0.0584
- The information below is about IL_8GLP_075
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.3
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
9YPT|1|5|U|1905
9YPT|1|5|U|1906
9YPT|1|5|A|1907
9YPT|1|5|A|1908
9YPT|1|5|G|1909
*
9YPT|1|5|C|2067
9YPT|1|5|C|2068
9YPT|1|5|A|2069
9YPT|1|5|U|2070
9YPT|1|5|A|2071
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 60S ribosomal protein L7
- Chain Q
- Ribosomal protein L18
- Chain e
- Ribosomal protein L32
- Chain f
- eL33
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