IL_9YPT_079
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9YPT|1|5|C|1935, 9YPT|1|5|A|2041, 9YPT|1|5|U|2044, 9YPT|1|5|G|2045
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPT|1|5|G|1933
9YPT|1|5|A|1934
9YPT|1|5|C|1935
9YPT|1|5|C|1936
9YPT|1|5|C|1937
9YPT|1|5|C|1938
9YPT|1|5|A|1939
9YPT|1|5|G|1940
9YPT|1|5|A|1941
9YPT|1|5|A|1942
9YPT|1|5|A|1943
9YPT|1|5|A|1944
*
9YPT|1|5|U|2038
9YPT|1|5|G|2039
9YPT|1|5|A|2040
9YPT|1|5|A|2041
9YPT|1|5|A|2042
9YPT|1|5|A|2043
9YPT|1|5|U|2044
9YPT|1|5|G|2045
9YPT|1|5|G|2046
9YPT|1|5|A|2047
9YPT|1|5|U|2048
9YPT|1|5|G|2049
9YPT|1|5|G|2050
9YPT|1|5|C|2051
9YPT|1|5|G|2052
9YPT|1|5|C|2053
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- Ribosomal protein L3
- Chain I
- 60S ribosomal protein L10
- Chain O
- Large ribosomal subunit protein uL13
- Chain f
- eL33
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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