IL_9YPT_118

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9YPT|1|5|A|3785, 9YPT|1|5|C|3791, 9YPT|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|C|3781
9YPT|1|5|C|3782
9YPT|1|5|A|3783
9YPT|1|5|A|3784
9YPT|1|5|A|3785
9YPT|1|5|U|3786
9YPT|1|5|G|3787
9YPT|1|5|C|3788
9YPT|1|5|C|3789
9YPT|1|5|U|3790
9YPT|1|5|C|3791
9YPT|1|5|G|3792
*
9YPT|1|5|C|3808
9YPT|1|5|G|3809
9YPT|1|5|C|3810
9YPT|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41