IL_9YPT_119

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPT_119 not in the Motif Atlas

Homologous match to IL_9PN5_088

Geometric discrepancy: 0.0573

The information below is about IL_9PN5_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.5

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

13

Unit IDs

9YPT|1|5|G|3895
9YPT|1|5|C|3896
9YPT|1|5|G|3897
9YPT|1|5|G|3898
*
9YPT|1|5|U|4563
9YPT|1|5|A|4564
9YPT|1|5|C|4565

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13