IL_9YPT_127

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGG*CCGCCGGUGAAAUAC

Length

20 nucleotides

Bulged bases

9YPT|1|5|C|4041

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|G|3970
9YPT|1|5|G|3971
9YPT|1|5|A|3972
9YPT|1|5|G|3973
9YPT|1|5|G|3974
*
9YPT|1|5|C|4037
9YPT|1|5|C|4038
9YPT|1|5|G|4039
9YPT|1|5|C|4040
9YPT|1|5|C|4041
9YPT|1|5|G|4042
9YPT|1|5|G|4043
9YPT|1|5|U|4044
9YPT|1|5|G|4045
9YPT|1|5|A|4046
9YPT|1|5|A|4047
9YPT|1|5|A|4048
9YPT|1|5|U|4049
9YPT|1|5|A|4050
9YPT|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA