IL_9YPT_129

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAGGC*GCUC

Length

11 nucleotides

Bulged bases

9YPT|1|5|G|4084, 9YPT|1|5|G|4086, 9YPT|1|5|G|4087, 9YPT|1|5|C|4162, 9YPT|1|5|U|4163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|G|4082
9YPT|1|5|U|4083
9YPT|1|5|G|4084
9YPT|1|5|A|4085
9YPT|1|5|G|4086
9YPT|1|5|G|4087
9YPT|1|5|C|4088
*
9YPT|1|5|G|4161
9YPT|1|5|C|4162
9YPT|1|5|U|4163
9YPT|1|5|C|4164

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain X

eL23