IL_9YPT_161
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 9YPT|1|5|C|4757, 9YPT|1|5|U|4758, 9YPT|1|5|A|4764, 9YPT|1|5|G|4870, 9YPT|1|5|C|4871, 9YPT|1|5|G|4873, 9YPT|1|5|A|4876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPT|1|5|C|4756
9YPT|1|5|C|4757
9YPT|1|5|U|4758
9YPT|1|5|C|4759
9YPT|1|5|G|4760
9YPT|1|5|G|4761
9YPT|1|5|A|4762
9YPT|1|5|U|4763
9YPT|1|5|A|4764
9YPT|1|5|G|4765
9YPT|1|5|C|4766
*
9YPT|1|5|G|4868
9YPT|1|5|U|4869
9YPT|1|5|G|4870
9YPT|1|5|C|4871
9YPT|1|5|G|4872
9YPT|1|5|G|4873
9YPT|1|5|A|4874
9YPT|1|5|G|4875
9YPT|1|5|A|4876
9YPT|1|5|G|4877
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- Large ribosomal subunit protein uL13
- Chain S
- 60S ribosomal protein L18a
Coloring options: