IL_9YPT_172
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPT_172 not in the Motif Atlas
- Homologous match to IL_9H3G_146
- Geometric discrepancy: 0.1516
- The information below is about IL_9H3G_146
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9YPT|1|5|A|5014
9YPT|1|5|G|5015
9YPT|1|5|A|5016
9YPT|1|5|G|5017
*
9YPT|1|5|C|5032
9YPT|1|5|G|5033
9YPT|1|5|A|5034
9YPT|1|5|U|5035
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain II
- 40S ribosomal protein S8
- Chain R
- Ribosomal protein L19
Coloring options: