IL_9YPT_183
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAA*UGACG
- Length
- 9 nucleotides
- Bulged bases
- 9YPT|1|9|A|516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPT_183 not in the Motif Atlas
- Geometric match to IL_8GLP_190
- Geometric discrepancy: 0.0794
- The information below is about IL_8GLP_190
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.5
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 50
Unit IDs
9YPT|1|9|C|37
9YPT|1|9|A|38
9YPT|1|9|A|39
9YPT|1|9|A|40
*
9YPT|1|9|U|514
9YPT|1|9|G|515
9YPT|1|9|A|516
9YPT|1|9|C|517
9YPT|1|9|G|518
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4 (S4 X isoform)
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain jj
- GTP-binding protein 1
Coloring options: