IL_9YPT_242

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACAGGA*UUC

Length

10 nucleotides

Bulged bases

9YPT|1|9|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|G|1281
9YPT|1|9|A|1282
9YPT|1|9|C|1283
9YPT|1|9|A|1284
9YPT|1|9|G|1285
9YPT|1|9|G|1286
9YPT|1|9|A|1287
*
9YPT|1|9|U|1314
9YPT|1|9|U|1315
9YPT|1|9|C|1316

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

Small ribosomal subunit protein eS10

Chain MM

40S ribosomal protein S12

Chain ff

Ribosomal protein S27a