IL_9YPT_258

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCUACC*GUAACC

Length

15 nucleotides

Bulged bases

9YPT|1|9|A|1580, 9YPT|1|9|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|G|1550
9YPT|1|9|U|1551
9YPT|1|9|G|1552
9YPT|1|9|C|1553
9YPT|1|9|C|1554
9YPT|1|9|U|1555
9YPT|1|9|A|1556
9YPT|1|9|C|1557
9YPT|1|9|C|1558
*
9YPT|1|9|G|1577
9YPT|1|9|U|1578
9YPT|1|9|A|1579
9YPT|1|9|A|1580
9YPT|1|9|C|1581
9YPT|1|9|C|1582

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S3

Chain KK

Small ribosomal subunit protein eS10

Chain UU

uS10

Chain dd

eS29