IL_9YPV_019
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPV_019 not in the Motif Atlas
- Homologous match to IL_8GLP_021
- Geometric discrepancy: 0.0523
- The information below is about IL_8GLP_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9YPV|1|5|G|415
9YPV|1|5|U|416
9YPV|1|5|G|417
9YPV|1|5|A|418
9YPV|1|5|A|419
9YPV|1|5|A|420
9YPV|1|5|C|421
*
9YPV|1|8|G|13
9YPV|1|8|U|14
9YPV|1|8|G|15
9YPV|1|8|G|16
9YPV|1|8|A|17
9YPV|1|8|U|18
9YPV|1|8|C|19
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- Large ribosomal subunit protein uL22
- Chain e
- Ribosomal protein L32
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