IL_9YPV_076
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9YPV|1|5|U|1930, 9YPV|1|5|C|1931, 9YPV|1|5|G|2055, 9YPV|1|5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPV_076 not in the Motif Atlas
- Homologous match to IL_8GLP_079
- Geometric discrepancy: 0.1182
- The information below is about IL_8GLP_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_39054.3
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9YPV|1|5|C|1926
9YPV|1|5|U|1927
9YPV|1|5|C|1928
9YPV|1|5|A|1929
9YPV|1|5|U|1930
9YPV|1|5|C|1931
9YPV|1|5|A|1932
9YPV|1|5|G|1933
*
9YPV|1|5|C|2053
9YPV|1|5|U|2054
9YPV|1|5|G|2055
9YPV|1|5|G|2056
9YPV|1|5|A|2057
9YPV|1|5|G|2058
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- Large ribosomal subunit protein uL13
- Chain S
- 60S ribosomal protein L18a
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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