IL_9YPV_101
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAG*CCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPV_101 not in the Motif Atlas
- Homologous match to IL_9H3G_084
- Geometric discrepancy: 0.0882
- The information below is about IL_9H3G_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10432.3
- Basepair signature
- cWW-tWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9YPV|1|5|A|2844
9YPV|1|5|A|2845
9YPV|1|5|G|2846
*
9YPV|1|5|C|3842
9YPV|1|5|C|3843
9YPV|1|5|U|3844
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
- Chain W
- eL24
Coloring options: