IL_9YPV_108

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9YPV|1|5|A|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_108 not in the Motif Atlas

Homologous match to IL_8GLP_113

Geometric discrepancy: 0.0625

The information below is about IL_8GLP_113

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9YPV|1|5|C|3632
9YPV|1|5|C|3633
*
9YPV|1|5|G|3827
9YPV|1|5|A|3828
9YPV|1|5|G|3829

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain n

eL41