IL_9YPV_109

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9YPV|1|5|A|3663, 9YPV|1|5|U|3679, 9YPV|1|5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|C|3660
9YPV|1|5|G|3661
9YPV|1|5|A|3662
9YPV|1|5|A|3663
9YPV|1|5|G|3664
9YPV|1|5|G|3665
*
9YPV|1|5|U|3677
9YPV|1|5|G|3678
9YPV|1|5|U|3679
9YPV|1|5|U|3680
9YPV|1|5|G|3681
9YPV|1|5|A|3682
9YPV|1|5|C|3683
9YPV|1|5|G|3684

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain A

Ribosomal protein L8

Chain p

eL43