IL_9YPV_125

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|G|3970
9YPV|1|5|G|3971
9YPV|1|5|A|3972
9YPV|1|5|G|3973
*
9YPV|1|5|C|4038
9YPV|1|5|G|4039
9YPV|1|5|C|4040
9YPV|1|5|C|4041
9YPV|1|5|G|4042
9YPV|1|5|G|4043
9YPV|1|5|U|4044
9YPV|1|5|G|4045
9YPV|1|5|A|4046
9YPV|1|5|A|4047
9YPV|1|5|A|4048
9YPV|1|5|U|4049
9YPV|1|5|A|4050
9YPV|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA