IL_9YPV_155

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9YPV|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|5|G|4680
9YPV|1|5|A|4681
9YPV|1|5|U|4682
9YPV|1|5|U|4683
9YPV|1|5|A|4684
9YPV|1|5|U|4685
*
9YPV|1|5|A|4705
9YPV|1|5|G|4706
9YPV|1|5|A|4707
9YPV|1|5|A|4708
9YPV|1|5|U|4709
9YPV|1|5|C|4710

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

Large ribosomal subunit protein uL13

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein