IL_9YPV_187

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9YPV|1|9|G|113, 9YPV|1|9|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_187 not in the Motif Atlas

Homologous match to IL_9H3G_163

Geometric discrepancy: 0.1778

The information below is about IL_9H3G_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.5

Basepair signature

cWW-cWW

Number of instances in this motif group

36

Unit IDs

9YPV|1|9|U|112
9YPV|1|9|G|113
9YPV|1|9|G|114
9YPV|1|9|U|115
*
9YPV|1|9|A|348
9YPV|1|9|A|349

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11