IL_9YPV_230

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_230 not in the Motif Atlas

Geometric match to IL_8GLP_245

Geometric discrepancy: 0.0704

The information below is about IL_8GLP_245

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9YPV|1|9|U|1101
9YPV|1|9|G|1102
9YPV|1|9|C|1103
*
9YPV|1|9|G|1129
9YPV|1|9|G|1130
9YPV|1|9|G|1131

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

Ribosomal protein S13

Chain RR

eS17

Chain aa

40S ribosomal protein S26

Chain bb

40S ribosomal protein S27