IL_9YPV_255

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPV|1|9|G|1604
9YPV|1|9|G|1605
9YPV|1|9|G|1606
9YPV|1|9|A|1607
9YPV|1|9|U|1608
9YPV|1|9|C|1609
9YPV|1|9|G|1610
*
9YPV|1|9|C|1629
9YPV|1|9|A|1630
9YPV|1|9|U|1631
9YPV|1|9|G|1632
9YPV|1|9|A|1633
9YPV|1|9|A|1634
9YPV|1|9|C|1635

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain SS

uS13

Chain TT

eS19