IL_9YPV_256

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9YPV|1|9|C|1701, 9YPV|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_256 not in the Motif Atlas

Homologous match to IL_9H3G_233

Geometric discrepancy: 0.1688

The information below is about IL_9H3G_233

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9YPV|1|9|C|1700
9YPV|1|9|C|1701
9YPV|1|9|G|1702
*
9YPV|1|9|C|1833
9YPV|1|9|A|1834
9YPV|1|9|A|1835
9YPV|1|9|G|1836

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 10

MF mRNA

Chain 13

Transfer RNA; tRNA

Chain aa

40S ribosomal protein S26