IL_9YPW_018

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9YPW|1|5|G|409, 9YPW|1|5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|G|387
9YPW|1|5|A|388
9YPW|1|5|A|389
9YPW|1|5|C|390
*
9YPW|1|5|G|401
9YPW|1|5|A|402
9YPW|1|5|G|403
9YPW|1|5|U|404
9YPW|1|5|U|405
9YPW|1|5|C|406
9YPW|1|5|A|407
9YPW|1|5|A|408
9YPW|1|5|G|409
9YPW|1|5|A|410
9YPW|1|5|G|411
9YPW|1|5|G|412
9YPW|1|5|G|413
9YPW|1|5|C|414

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL22

Chain Y

uL24

Chain l

eL39