IL_9YPW_024

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9YPW|1|5|U|467, 9YPW|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|A|466
9YPW|1|5|U|467
9YPW|1|5|U|468
9YPW|1|5|C|469
9YPW|1|5|A|470
9YPW|1|5|A|471
9YPW|1|5|C|472
*
9YPW|1|5|G|682
9YPW|1|5|C|683
9YPW|1|5|G|684
9YPW|1|5|C|685
9YPW|1|5|A|686
9YPW|1|5|U|687
9YPW|1|5|U|688
9YPW|1|5|U|689

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

eL28