IL_9YPW_094
3D structure
- PDB id
- 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAUC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPW_094 not in the Motif Atlas
- Homologous match to IL_8GLP_096
- Geometric discrepancy: 0.0661
- The information below is about IL_8GLP_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.4
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 26
Unit IDs
9YPW|1|5|C|2589
9YPW|1|5|G|2590
9YPW|1|5|A|2591
9YPW|1|5|U|2592
9YPW|1|5|C|2593
*
9YPW|1|5|G|2752
9YPW|1|5|G|2753
9YPW|1|5|G|2754
9YPW|1|5|A|2755
9YPW|1|5|G|2756
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain Z
- 60S ribosomal protein L27
- Chain g
- Large ribosomal subunit protein eL34
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