IL_9YPW_104

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|G|2847
9YPW|1|5|G|2848
9YPW|1|5|A|2849
9YPW|1|5|A|2850
9YPW|1|5|G|2851
9YPW|1|5|U|2852
9YPW|1|5|C|2853
9YPW|1|5|G|2854
9YPW|1|5|G|2855
*
9YPW|1|5|C|3837
9YPW|1|5|U|3838
9YPW|1|5|G|3839
9YPW|1|5|U|3840
9YPW|1|5|C|3841

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

Ribosomal protein L23