IL_9YPW_126

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9YPW|1|5|C|4041

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|G|3970
9YPW|1|5|G|3971
9YPW|1|5|A|3972
9YPW|1|5|G|3973
*
9YPW|1|5|C|4038
9YPW|1|5|G|4039
9YPW|1|5|C|4040
9YPW|1|5|C|4041
9YPW|1|5|G|4042
9YPW|1|5|G|4043
9YPW|1|5|U|4044
9YPW|1|5|G|4045
9YPW|1|5|A|4046
9YPW|1|5|A|4047
9YPW|1|5|A|4048
9YPW|1|5|U|4049
9YPW|1|5|A|4050
9YPW|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA