IL_9YPW_138

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPW_138 not in the Motif Atlas

Homologous match to IL_9PN5_099

Geometric discrepancy: 0.119

The information below is about IL_9PN5_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46637.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

25

Unit IDs

9YPW|1|5|U|4403
9YPW|1|5|U|4404
9YPW|1|5|G|4405
*
9YPW|1|5|U|4439
9YPW|1|5|G|4440

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10