IL_9YPW_157

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

9YPW|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|5|G|4680
9YPW|1|5|A|4681
9YPW|1|5|U|4682
9YPW|1|5|U|4683
9YPW|1|5|A|4684
9YPW|1|5|U|4685
*
9YPW|1|5|A|4705
9YPW|1|5|G|4706
9YPW|1|5|A|4707
9YPW|1|5|A|4708
9YPW|1|5|U|4709
9YPW|1|5|C|4710

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

Large ribosomal subunit protein uL13

Chain m

Ubiquitin-ribosomal protein eL40 fusion protein