IL_9YPW_189
3D structure
- PDB id
- 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 9YPW|1|9|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPW_189 not in the Motif Atlas
- Homologous match to IL_9H3G_165
- Geometric discrepancy: 0.0941
- The information below is about IL_9H3G_165
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_24485.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9YPW|1|9|G|145
9YPW|1|9|G|146
9YPW|1|9|A|147
9YPW|1|9|U|148
9YPW|1|9|A|149
9YPW|1|9|A|150
9YPW|1|9|C|151
*
9YPW|1|9|G|167
9YPW|1|9|C|168
9YPW|1|9|U|169
9YPW|1|9|A|170
9YPW|1|9|A|171
9YPW|1|9|U|172
9YPW|1|9|A|173
9YPW|1|9|C|174
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain GG
- 40S ribosomal protein S6
- Chain W
- eL24
- Chain YY
- Small ribosomal subunit protein eS24
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