IL_9YPW_202

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

9YPW|1|9|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPW_202 not in the Motif Atlas

Homologous match to IL_9PN5_166

Geometric discrepancy: 0.0592

The information below is about IL_9PN5_166

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

77

Unit IDs

9YPW|1|9|U|495
9YPW|1|9|C|496
*
9YPW|1|9|G|506
9YPW|1|9|G|507
9YPW|1|9|A|508

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain EE

eS4 (S4 X isoform)

Chain JJ

Ribosomal protein S9 (Predicted)

Chain YY

Small ribosomal subunit protein eS24