IL_9YPW_226

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9YPW|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|9|G|952
9YPW|1|9|C|953
9YPW|1|9|U|954
9YPW|1|9|A|955
9YPW|1|9|G|956
*
9YPW|1|9|C|967
9YPW|1|9|U|968
9YPW|1|9|U|969
9YPW|1|9|G|970
9YPW|1|9|G|971
9YPW|1|9|A|972
9YPW|1|9|C|973
9YPW|1|9|C|974

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S3a

Chain OO

Small ribosomal subunit protein uS11