IL_9YPW_240

3D structure

PDB id

9YPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAGGA*UUC

Length

10 nucleotides

Bulged bases

9YPW|1|9|A|1284, 9YPW|1|9|G|1285, 9YPW|1|9|G|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPW|1|9|G|1281
9YPW|1|9|A|1282
9YPW|1|9|C|1283
9YPW|1|9|A|1284
9YPW|1|9|G|1285
9YPW|1|9|G|1286
9YPW|1|9|A|1287
*
9YPW|1|9|U|1314
9YPW|1|9|U|1315
9YPW|1|9|C|1316

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain KK

Small ribosomal subunit protein eS10

Chain MM

40S ribosomal protein S12

Chain ff

Ribosomal protein S27a