IL_9YPW_243
3D structure
- PDB id
- 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- ACAG*CUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPW_243 not in the Motif Atlas
- Geometric match to IL_8CRE_458
- Geometric discrepancy: 0.3663
- The information below is about IL_8CRE_458
- Detailed Annotation
- Non-canonical cWW with near cWH
- Broad Annotation
- Non-canonical cWW with near cWH
- Motif group
- IL_10994.3
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9YPW|1|9|A|1291
9YPW|1|9|C|1292
9YPW|1|9|A|1293
9YPW|1|9|G|1294
*
9YPW|1|9|C|1305
9YPW|1|9|U|1306
9YPW|1|9|U|1307
9YPW|1|9|U|1308
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain PP
- uS19
- Chain dd
- eS29
- Chain ff
- Ribosomal protein S27a
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