IL_9YPY_019

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

9YPY|1|5|G|409, 9YPY|1|5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|G|387
9YPY|1|5|A|388
9YPY|1|5|A|389
9YPY|1|5|C|390
*
9YPY|1|5|G|401
9YPY|1|5|A|402
9YPY|1|5|G|403
9YPY|1|5|U|404
9YPY|1|5|U|405
9YPY|1|5|C|406
9YPY|1|5|A|407
9YPY|1|5|A|408
9YPY|1|5|G|409
9YPY|1|5|A|410
9YPY|1|5|G|411
9YPY|1|5|G|412
9YPY|1|5|G|413
9YPY|1|5|C|414

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL22

Chain Y

uL24

Chain l

eL39