IL_9YPY_026
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9YPY|1|5|C|481|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPY_026 not in the Motif Atlas
- Geometric match to IL_7KGA_004
- Geometric discrepancy: 0.187
- The information below is about IL_7KGA_004
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_05642.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 72
Unit IDs
9YPY|1|5|G|481
9YPY|1|5|C|481|||A
9YPY|1|5|G|482
*
9YPY|1|5|C|672
9YPY|1|5|C|673
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain r
- eL28
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