IL_9YPY_036

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

9YPY|1|5|A|932, 9YPY|1|5|G|933, 9YPY|1|5|A|935, 9YPY|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|A|732
9YPY|1|5|A|733
9YPY|1|5|G|734
9YPY|1|5|G|735
*
9YPY|1|5|C|928
9YPY|1|5|A|929
9YPY|1|5|G|930
9YPY|1|5|C|931
9YPY|1|5|A|932
9YPY|1|5|G|933
9YPY|1|5|C|934
9YPY|1|5|A|935
9YPY|1|5|G|935|||A
9YPY|1|5|C|936
9YPY|1|5|U|937

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a