IL_9YPY_066
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9YPY|1|5|G|1741
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPY_066 not in the Motif Atlas
- Homologous match to IL_9H3G_046
- Geometric discrepancy: 0.0742
- The information below is about IL_9H3G_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.4
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9YPY|1|5|G|1739
9YPY|1|5|C|1740
9YPY|1|5|G|1741
9YPY|1|5|A|1742
9YPY|1|5|A|1743
9YPY|1|5|U|1744
*
9YPY|1|5|A|1786
9YPY|1|5|A|1787
9YPY|1|5|A|1788
9YPY|1|5|C|1789
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL18
- Chain I
- 60S ribosomal protein L10
- Chain T
- eL21
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