IL_9YPY_087
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 9YPY|1|5|U|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPY_087 not in the Motif Atlas
- Homologous match to IL_8GLP_086
- Geometric discrepancy: 0.0459
- The information below is about IL_8GLP_086
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.4
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 31
Unit IDs
9YPY|1|5|C|2302
9YPY|1|5|C|2303
9YPY|1|5|U|2304
9YPY|1|5|U|2305
9YPY|1|5|G|2306
9YPY|1|5|A|2307
9YPY|1|5|A|2308
9YPY|1|5|G|2309
*
9YPY|1|5|U|2329
9YPY|1|5|G|2330
9YPY|1|5|G|2331
9YPY|1|5|A|2332
9YPY|1|5|G|2333
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain Y
- uL24
- Chain e
- Ribosomal protein L32
Coloring options: