IL_9YPY_117

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9YPY|1|5|A|3785, 9YPY|1|5|C|3791, 9YPY|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|C|3781
9YPY|1|5|C|3782
9YPY|1|5|A|3783
9YPY|1|5|A|3784
9YPY|1|5|A|3785
9YPY|1|5|U|3786
9YPY|1|5|G|3787
9YPY|1|5|C|3788
9YPY|1|5|C|3789
9YPY|1|5|U|3790
9YPY|1|5|C|3791
9YPY|1|5|G|3792
*
9YPY|1|5|C|3808
9YPY|1|5|G|3809
9YPY|1|5|C|3810
9YPY|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 12

Transfer RNA; tRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41