IL_9YPY_126

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9YPY|1|5|C|4041

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|G|3970
9YPY|1|5|G|3971
9YPY|1|5|A|3972
9YPY|1|5|G|3973
*
9YPY|1|5|C|4038
9YPY|1|5|G|4039
9YPY|1|5|C|4040
9YPY|1|5|C|4041
9YPY|1|5|G|4042
9YPY|1|5|G|4043
9YPY|1|5|U|4044
9YPY|1|5|G|4045
9YPY|1|5|A|4046
9YPY|1|5|A|4047
9YPY|1|5|A|4048
9YPY|1|5|U|4049
9YPY|1|5|A|4050
9YPY|1|5|C|4051

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 11

Transfer RNA; tRNA