IL_9YPY_270

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPY_270 not in the Motif Atlas

Geometric match to IL_5Y85_005

Geometric discrepancy: 0.3969

The information below is about IL_5Y85_005

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.11

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

9YPY|1|9|C|1750
9YPY|1|9|C|1751
*
9YPY|1|9|G|1782
9YPY|1|9|C|1783
9YPY|1|9|G|1784

Current chains

Chain 9

18S ribosomal RNA

Nearby chains