IL_9YPZ_002

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

9YPZ|1|5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPZ_002 not in the Motif Atlas

Homologous match to IL_8GLP_002

Geometric discrepancy: 0.0819

The information below is about IL_8GLP_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9YPZ|1|5|A|12
9YPZ|1|5|U|13
9YPZ|1|5|C|14
*
9YPZ|1|8|G|143
9YPZ|1|8|U|144

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain X

eL23