IL_9YPZ_024

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9YPZ|1|5|U|467, 9YPZ|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|5|A|466
9YPZ|1|5|U|467
9YPZ|1|5|U|468
9YPZ|1|5|C|469
9YPZ|1|5|A|470
9YPZ|1|5|A|471
9YPZ|1|5|C|472
*
9YPZ|1|5|G|682
9YPZ|1|5|C|683
9YPZ|1|5|G|684
9YPZ|1|5|C|685
9YPZ|1|5|A|686
9YPZ|1|5|U|687
9YPZ|1|5|U|688
9YPZ|1|5|U|689

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

eL28