IL_9YPZ_028
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9YPZ|1|5|U|492
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPZ_028 not in the Motif Atlas
- Geometric match to IL_8TQX_002
- Geometric discrepancy: 0.3415
- The information below is about IL_8TQX_002
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 173
Unit IDs
9YPZ|1|5|G|491
9YPZ|1|5|U|492
9YPZ|1|5|G|493
*
9YPZ|1|5|C|661
9YPZ|1|5|C|662
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Q
- Ribosomal protein L18
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